SubtiBank SubtiBank
Version comparison:

2017-8-11 16:0:32025-04-10 19:24:20

locus

BSU18000

BSU_18000

geneLength

2727

2730

outlinks

bsu

BSU18000

BSU_18000

The protein

Catalyzed reaction/ biological activity

Citrate <=> isocitrate

Binding to iron responsive elements (IRE RNA) in the absence of the FeS cluster [Pubmed|23354745,10468622]

Citrate --> isocitrate (according to UniProt)

3-hydroxybutane-1,2,3-tricarboxylate --> 2-methyl-cis-aconitate + H2O (according to UniProt)

Binding to iron responsive elements (IRE RNA) in the absence of the FeS cluster [Pubmed|23354745,10468622]

2-methylaconitate --> 2-methyl-isocitrate in the methylcitric acid cycle [pubmed|28956599]

The protein

[SW|Cofactors]

FeS cluster

FeS cluster [pubmed|29292548]

The protein

Structure

[PDB|1L5J] (''E. coli'') [pubmed|11992126]

[PDB|2B3X] (the human enzyme, 53% identity) [pubmed|16407072]

Biological materials

Mutant

GP1275 (Δ''citB''::''erm''), available in [SW|Jörg Stülke]'s lab

GP1441 (ΔcitB::spc), available in [SW|Jörg Stülke]'s lab

1A999 (''citB''::''spec''), [Pubmed| ], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A999&Search=1A999 BGSC]

GP2338 (Δ''[[gene|citB]]''::''kan''), Cre-recombinase is integrated in ''[[gene|sacA]]'', available in [SW|Jörg Stülke]'s lab

GP2339 (Δ''[[gene|citB]]''::''lox72''), Cre-recombinase is integrated in ''[[gene|sacA]]'', available in [SW|Jörg Stülke]'s lab

GP1275 Δ''citB''::''erm'', available in [SW|Jörg Stülke]'s lab

GP1441 ΔcitB::spc, available in [SW|Jörg Stülke]'s lab

1A999 (''citB'')::''spec'', [Pubmed| ], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A999&Search=1A999 BGSC]

GP2338 Δ''[[gene|citB]]''::''kan'', Cre-recombinase is integrated in ''[[gene|sacA]]'', available in [SW|Jörg Stülke]'s lab

GP2339 Δ''[[gene|citB]]''::''lox72'', Cre-recombinase is integrated in ''[[gene|sacA]]'', available in [SW|Jörg Stülke]'s lab

BKE18000 (Δ[[gene|citB]]::erm trpC2)available at [http://www.bgsc.org/getdetail.php?bgscid=BKE18000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTCCAAAATCCCCCTT, downstream forward: _UP4_TGATGAATCAATAGGAAGAG

BKK18000 (Δ[[gene|citB]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK18000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTCCAAAATCCCCCTT, downstream forward: _UP4_TGATGAATCAATAGGAAGAG

Biological materials

lacZ fusion

pGP700 (in [[protein|pAC5]]), available in [SW|Jörg Stülke]'s lab

pGP700 (in [SW|pAC5]), available in [SW|Jörg Stülke]'s lab

Labs working on this gene/protein

[SW|Linc Sonenshein], Tufts University, Boston, MA, USA [http://www.tufts.edu/sackler/microbiology/faculty/sonenshein/index.html Homepage]

[SW|Jörg Stülke], University of Göttingen, Germany [http://wwwuser.gwdg.de/~genmibio/stuelke.html Homepage]

References

Reviews

12732309, 2696478, 18261896, 18086213

12732309, 2696478, 18261896, 18086213, 32850966

References

Original publications

18697947, 20097860, 2118511, 12850135, 2413006, 10656796, 10468622, 6143742, 16395550, 16923907, 9642180, 9393699, 12591885, 2105305, 20933603, 21099137, 21446632, 21821766, 22389480, 23139400, 23354745, 20817675, 15378759, 16923908, 21744456, 11992126

18697947, 20097860, 2118511, 12850135, 2413006, 10656796, 10468622, 6143742, 16395550, 16923907, 9642180, 9393699, 12591885, 2105305, 20933603, 21099137, 21446632, 21821766, 22389480, 23139400, 23354745, 20817675, 15378759, 16923908, 21744456, 11992126, 28956599, 16407072

The protein

Protein family

aconitase/IPM isomerase family (with [[protein|LeuC]], according to UniProt)

The protein

Paralogous protein(s)

[[this]]

Biological materials

Expression vector

pGP1810 (N-terminal Strep-tag, purification from ''E. coli'', in [SW|pGP172]), available in [SW|Jörg Stülke]'s lab

labs

[SW|Linc Sonenshein], Tufts University, Boston, MA, USA [http://www.tufts.edu/sackler/microbiology/faculty/sonenshein/index.html Homepage]

[SW|Jörg Stülke], University of Göttingen, Germany [http://genmibio.uni-goettingen.de Homepage]